Language Breakdown
Lines of code distribution across 8 owned repositories
Collaboration Network
Global Impact visualization
Repos
8
PRs
0
Growth
+18%
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Coding Streak
Contribution activity over the past year
valentinatsar
@valentinatsar
Ioannis Sarropoulos
@ioansarr
Hadley Wickham
@hadley
Elina Tangili
@elina-ta
Joana Stra
@joannastra08
Top Repositories
End-to-end pipeline for 16S rRNA amplicon sequencing analysis using QIIME2. This workflow covers preprocessing, denoising, taxonomic assignment, phylogenetics, diversity analysis, differential abundance testing, and data export for downstream analysis in R.
Comprehensive pipeline for RNA-Seq data analysis, covering read alignment, BAM processing, quality control, and differential expression analysis using metaseqR2. Designed for hands-on training in transcriptomics and suitable for execution on Linux-based systems.
This workflow outlines the main stages involved in metagenomic data analysis, including data acquisition, preprocessing, assembly, and the generation of metagenome-assembled genomes (MAGs) followed by their annotation.
End-to-end NGS pipeline for quality control, read trimming, BWA mapping, BAM processing, and biallelic SNP calling using FreeBayes on HPC systems.
Open Source Impact
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